PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003139.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TCP
Protein Properties Length: 102aa    MW: 10590 Da    PI: 6.9541
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003139.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP83.17e-261662488
                      TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88
                             ++a+caar+F+L++eLG+++d++t++WLlqqa+pai+++tg ++++as+   +++ s+s++  s +
  Itr_sc003139.1_g00002.1  1 MPALCAARIFQLTRELGHKTDGETVQWLLQQAEPAIIAATGIGTIPASALaATVEASVSEQGTSVS 66
                             9**********************************************8887444444444433333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136921.295139IPR017887Transcription factor TCP subgroup
PfamPF036345.6E-21174IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MPALCAARIF QLTRELGHKT DGETVQWLLQ QAEPAIIAAT GIGTIPASAL AATVEASVSE  60
QGTSVSASLH EFVGIRSHWA VMGGANNLSR PQISSAAAIR SH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217748.19e-36hypothetical protein PRUPE_ppa009925mg
RefseqXP_008231091.11e-35PREDICTED: transcription factor TCP20
SwissprotQ9LSD51e-27TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A068UY752e-36A0A068UY75_COFCA; Uncharacterized protein
STRINGGLYMA19G26560.12e-31(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-19TCP family protein